GgaEX1046466 @ galGal3
Exon Skipping
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56586010-56588027:+
Coord C1 exon
chr4:56586010-56586188
Coord A exon
chr4:56586811-56586952
Coord C2 exon
chr4:56587831-56588027
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTGTTAATGACACAGATG
3' ss Score
4.75
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
GGGTGCTGCCAAGGCATGGAGCCAGGCTTACTTTGGAGAAGGCTCAGGCCCTGTGCTGCTGGATGAAGTGCAGTGTACAGGAAATGAGCTATCTATAGAACAGTGTCCAAAAAGCTCTTGGAGAGAACATAACTGCGACCACAAAGAAGATGCTGGTGTTTCCTGTACACCTCTCACAG
Seq A exon
ATGGTGCATTAAGGCTAACAAGTGGGAAAGGCAGTCATGAGGGACGCCTGGAGGTCTATTATTCTGGGCAGTGGGGCACAATCTGCGATGATGGGTGGACAGAGCTGAATACACAGGTGGCTTGCCGGCAGCTGGGATTTAA
Seq C2 exon
GTATGGAAAAAGTGTGCCTGAGAGCTCCTCAGAAGGAAACTCTGGTCCCATCTGGTTGGATGATGTCAGCTGCTCTGGGAAGGAAACAAACCTTCTGCAGTGCTCAAGGAGAGAGTGGGGAAAGCATGACTGCAGCCATCAGGAGGATGTCAGACTCATTTGCCATCCAGATAACAACAGCCATAAACTCTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(42.3=85.4)
C2:
PF0053013=SRCR=PD(56.7=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGATGAAGTGCAGTGT
R:
CCCACTCTCTCCTTGAGCACT
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]