DreEX6031192 @ danRer10
Exon Skipping
Gene
ENSDARG00000061830 | prss12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:ZFIN;Acc:ZDB-GENE-090313-45]
Coordinates
chr1:19399622-19402344:+
Coord C1 exon
chr1:19399622-19399800
Coord A exon
chr1:19401275-19401416
Coord C2 exon
chr1:19402148-19402344
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTTCGTTTCTCTTCCTCAGACG
3' ss Score
9.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGGCATTGCGAAGGCTTGGGTGGGAGCGTATTTCGGCGCAGGCTCTGGGCGTGTGTTTTTGGATGAGGTGAGCTGCACCGGAAATGAGCTTTCAATAGAGCAGTGTCCAAAAACTGCCTGGGGGGAGCATAACTGTGACCACACAGAGGATGCTGGAGTGTCCTGTGTACCACTTACAG
Seq A exon
ACGGTGCAGTGCGTCTGGTTGGGGGTGTAAAGGGTTATGAAGGGAGACTGGAGGTCCATTACAGAGGACAGTGGGGGACTGTGTGTGATGATGGCTGGACACAGACTAACACACAGGTCGTCTGCAGGCAGCTGGGTTTCAG
Seq C2 exon
GTCAGGGGAGAGTGTATCAGCAGGGCGGTTTGGGATAGCGGCAGGTCCTGTTCTTCTGGATGATGTGCGCTGTACTGGAAAAGAGCCCACGGTCACACACTGCAGCCGGAGGGGTTGGTTTAAACATGACTGCACTCACAGACAGGATGTAGCCATTGTGTGCAGCCCCCAATGCTCCAGACATGGAGTACCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061830-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(42.3=85.4)
C2:
PF0053013=SRCR=PD(56.7=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCGGAAATGAGCTTTCA
R:
TCCTGTCTGTGAGTGCAGTCA
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]