HsaEX6085941 @ hg19
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:9477]
Coordinates
chr4:119234356-119239711:-
Coord C1 exon
chr4:119239533-119239711
Coord A exon
chr4:119237337-119237478
Coord C2 exon
chr4:119234356-119234552
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCCTCTTTATCACAGATG
3' ss Score
9.07
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
TGGCATTGCCAAAGCATGGCATCAGGCATATTTTGGGGAAGGGTCTGGCCCAGTTATGTTGGATGAAGTACGCTGCACTGGGAATGAGCTTTCAATTGAGCAGTGTCCAAAGAGCTCCTGGGGAGAGCATAACTGTGGCCATAAAGAAGATGCTGGAGTGTCCTGTACCCCTCTAACAG
Seq A exon
ATGGGGTCATCAGACTTGCAGGTGGGAAAGGCAGCCATGAGGGTCGCTTGGAGGTATATTACAGAGGCCAGTGGGGAACTGTCTGTGATGATGGCTGGACTGAGCTGAATACATACGTGGTTTGTCGACAATTGGGATTTAA
Seq C2 exon
ATATGGTAAACAAGCATCTGCCAACCATTTTGAAGAAAGCACAGGGCCCATATGGTTGGATGACGTCAGCTGCTCAGGAAAGGAAACCAGATTTCTTCAGTGTTCCAGGCGACAGTGGGGAAGGCATGACTGCAGCCACCGCGAAGATGTTAGCATTGCCTGCTACCCTGGCGGCGAGGGACACAGGCTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(42.3=85.4)
C2:
PF0053013=SRCR=PD(56.7=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGCCCAGTTATGTTGG
R:
CTGTCGCCTGGAACACTGAAG
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)