GgaEX0007109 @ galGal3
Exon Skipping
Gene
ENSGALG00000005156 | F1NVZ2_CHICK
Description
NA
Coordinates
chr6:16997511-16998972:-
Coord C1 exon
chr6:16998794-16998972
Coord A exon
chr6:16998382-16998523
Coord C2 exon
chr6:16997511-16997710
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTACCCCTTGCAGAGG
3' ss Score
10.12
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGGGAACCCAAAAGCCTTGTCGTGGGCTCACTATGGGCAGGGATCTGGTCCCATCCTGCTAGATGAAGTGGAGTGCTCAGGCAATGAACTCTCACTTGACCAATGCAAGAAGAGTGACTGGGGACAACAAAACTGTGACCATATTGAAGATGCTGGCGTCTCTTGTGATCCTTTCACAG
Seq A exon
AGGGCACTGTAAGGCTGACTGGTGGTCGCAGCCCCAGCGAAGGCAGGGTAGAAGTTTATTACAATGGAGACTGGGGCACAGTATGTGATGATGGCTGGACAGACCTCAGTGCCCAGGTGGTCTGCAGACAGCTGGGCTTCAG
Seq C2 exon
TGGTCCTGCTACCCTGGCCTCTGAAGCGGACTATGCTGCTGGCCAAGGCTTTATCTTGCTGGATGATGTGGCTTGTGTGGGCACAGAGCTCTCCCTCCTGGACTGTCCCCATAGCAATTGGGGGCAGCACGACTGCTCACACGCTGAGGACGTGGGAGTTCACTGTTCTCCAGAGAGCAACACAGTCACTGGCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005156-'4-5,'4-4,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.044
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(41.8=85.4)
C2:
PF0053013=SRCR=PD(57.1=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAAGAGTGACTGGGGA
R:
GAACAGTGAACTCCCACGTCC
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]