GgaINT0042702 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVZ2]
Coordinates
chr6:15469993-15471076:-
Coord C1 exon
chr6:15470877-15471076
Coord A exon
chr6:15470135-15470876
Coord C2 exon
chr6:15469993-15470134
Length
742 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
CCTGTGTTTTTATCCTGTAGGAC
3' ss Score
11.89
Exon sequences
Seq C1 exon
TGGTCCTGCTACCCTGGCCTCTGAAGCGGACTATGCTGCTGGCCAAGGCTTTATCTTGCTGGATGATGTGGCTTGTGTGGGCACAGAGCTCTCCCTCCTGGACTGTCCCCATAGCAATTGGGGGCAGCACGACTGCTCACACGCTGAGGACGTGGGAGTTCACTGTTCTCCAGAGAGCAACACAGTCACTGGCAGCCTGG
Seq A exon
GTAACTTGACTTGTGCCTTGCTCTGGACAGAGGGAAAACATCACTTTCTGGTCTGATCCTTTGGAAACTTTGGCAGATGTGTGAGCTTTCCCTGGGCTGCCTCAGTGAGAACTGGTTTTTGAGAAGGATTCATAGGAATAAGCCCTGGCTGTTTTGGGACAGAGCCTTAGAGCTGTGGTTCTTCAAGATGTATAGCCAGACCTGTAGAGAGATGGAAATTGAAGAGAACTGTGTTGAAATTTAGTTCTGTTCTTTTCTGAACAGAAAACTCTGTTTTCTCTATTGCAGGAAATTTTCCAATTTGTCATCCTTTTTTTTTTTTTTTTTTTAATTGAAATACATACCATCCAATTTTTTGTTGTTGTTTTTCCTGGATGTAGAACACTTTTCTTGCCTAGAATAATGTAATTGTTTTTATAATCTAATGGATTTCTTTCCAAGGCATGTTTAAGCTTGTCTGCTCTTGGCTCAGCAGTTAATAACTTTCTTTCTGTTCTTGTTCTCCTCTTTACTTAACTTTCAGAAATATGATCTAATAATTTCCAGTGTGTATTTAATAAATTAATATGCACCAATTTTGCAAGGAGGTGAAATGAGGGACATGGTTGTCATATAGATCAGCACTCTCCTCCTTCTCATCTCCTCCTCATCTCCTCAGTTTTTCCTATAAAAACTAAGTTCTGGGCACCTCATGCTCTTTGGTATTTTTGCTTGCAGCAACCCCTGTGTTTTTATCCTGTAG
Seq C2 exon
GACCTCCTGTGCGGCTGGTGGATGGAGAAAGCACCAAGGAGGGACGGGTTGAAGTATTCCTGAATGGACAGTGGGGCAGCGTCTGTGATGACGGCTGGACAGACAGAGATGCTACAGTAGTTTGCAGGCAACTGGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005156:ENSGALT00000008280:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=82.4)
A:
NA
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTGCTACCCTGGC
R:
CTGAATCCCAGTTGCCTGCAA
Band lengths:
342-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]