RnoINT0118665 @ rn6
Intron Retention
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227692481-227695408:+
Coord C1 exon
chr2:227692481-227692677
Coord A exon
chr2:227692678-227695266
Coord C2 exon
chr2:227695267-227695408
Length
2589 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATATTTAAACCATGACTTAGGTT
3' ss Score
3.82
Exon sequences
Seq C1 exon
ATATGGCAAACAGTCCTCTGTGAACCACTTTGAAGGCAGCAGCAGGCCCATATGGCTGGATGACGTCAGCTGCTCAGGAAAAGAAGCCAGCTTCATTCAGTGTTCCAGGAGACAGTGGGGAAGGCATGACTGCAGCCATAGGGAAGATGTGGGCCTCACCTGCTACCCTGACAGTGATGGTCATAGGCTTTCCCCAG
Seq A exon
GTAAGGACAGGATGCTGCTCCCGAGGTCACAGATGTTCACTCGGCTCTCCCAACCAGTCTAGAATGTGAAACCCATTCCACCCTTGACTTTACTGTCAAAAGGTCTGTTTCCCAAGAAAAATAACTTTTCAAATTCTCAACTACCATTACATGTCTAATTCTGGATTTGTTTTTCATTAAACGTCTAGATTGCTCAGTTAAAAAAAATGTTTATAATTCAATTCCAAGAATTTATATGATAGAAGGAGAGAAACAACTCCTTTAGGTTGTCTATCTACCTTGACAATCATGGTCCTGGGAGTGGATCCCAGAGACATTTACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGATTAAAAAATAAAATATGGTTTGTCATTTCTTTTAGAGTTTATAGAAATTTAGGGCTGGAGAGCTGGCCAGAGCACTGACTGTTATTTCTGAGGTCTGATTTTTCGTTCTAAGAAATCACATCAGCTCACCACTATCTGTGAGTCCGGTCTCAGGTGATCCCGGCCCTGCCTTCGGCCTCTGTAAGAACCAGGCATGCACAGACATATTTATAAGGAATACATCCATCCACATAAGAACAAATTAAATAAAAAGAGAATAGATGACATTTTCCTAAAACTATTGAGATAGATCATGGAGATCTAATTCCATGTAGATATATTTCCCTAACATTAAAACAAAGATTTAAAAATGTAAAAATTGAAAAAAAAATAAGAATCTTAAAAAATTTCTCCAGTTTAAATTGTGTCATTGGGGAAAGCGTTGTTTGGTTTTCTTTAAACCTCTTGTGAAGAACAGTAAAATTTCAGACACACTAATAAGAAATATAAAGCAACAAATGTTCTGTTTCATACATAGCTAAAACTTGCCACAGCTTGAACGCTACTAGCTAGAAGTGCATAGAATATTCACTTAAACATTCGCTGGTTTTGACTCTACCGTGTGATTCTCTCTTCTGTCTCATGAAGTAAGTCTGACCGAGGATTTAAGTTAAGGGTTGAATCATTCTGGATACCACAAGGAAGGATAGAGAACTAAAAATTATCATTTTTTTCTGTCTTTATTAGGACACAGATTACACTGCATTAGGACACACCCAAATGACTTCACAATTTTTTTTTTGCCCCAGTATGTGAGTCTCAGTATGTGAGCTTTAAACAGTACCACATGTTTTTTTTTTTCAGGGAGGTAGATTTTGGGATTTTGAGGAAGAAAAATAAAATATGTTCGTCTTGTCAACAAAGATTTTTAGGTAACAAATGTCCATTCATAATGCCATAAATCCCATATGTATATATTAAATGATATTTTGGTCATCAGGTCCCGGATCCCACCTCCTTGGTTGTTCTGATCATTTTTACCCTTAAGTTTTCAGTAACTAGTAAGTTCTCCTGAAGCTAGAGGACCCACCCAGGAACTAGGCAATCAGAGCTGTATGTATCCATCTGCTCCTTTGCTGTGAAGTCCATCCATGCAGTGGTGTCAACACAGACATTTAATTTCTCACAGTCTAGAAGTAAGACACTGAAACCCAGGGTCCAGTGAGCTTGGCTCCTCGGGAGGGAATTCTGAAGCAGGGACTGGAAAGAATACAGATTCTCCTGGTTCCTTGACTTGTAGATGGCAGTTCTTCTCTCAGTGCCTATTTGCATAGTGCCTTTTCTTTTTTTAAACTCTAAGTCCGTCTTCTTTTCCATGAGGACACCACTGTATAGACCCAGGATGGGGCTTCATGGATGTACCTTTCTATCCTGAAGAGTGAATCTCCGTAAAGACTCTGAGTGCCACCATCCATCAACCTACGACGGTCTCCATATTGTCTATATCTGTATCTTCCTTCCTATCTATATATTGTGGAGGACAGAGATGTGACATTCTATCGTTTGTGTAACTTCAACCTTAATTGAGAAATAGGTTTCTTGGTTTTTAAATATTAATATGTTTTGAGATTTAAGTCCTTTGAAATAAATAGTTGAGAAGGTTTTAGAATTTTTCCGATAGCTGACTTCCTCCATGGCACCCTTTCTAGCTGGCTGATCAACTTTGTTACCCATGTATGTCAATGTTTATACCTTCCTAAAAATTCCAATTTGGAAGTATATATTTCATCTATGTTCGTGAGTTACAAAGTGACCTAAAACAAAAGAACTCCATTAATACCCTATTACTATTTAGAAGTTAGTTGTAATAAAAAAATGGCTAGCTCATGATTTTAGAGTGCCATATATCCATCCATCCATCCATCCATCCATCCATACATACATACATACATACATACATACATACACATTCTTGTCTTCTGCATATGAGACATTTTCAAATGCCAGGAACAGAAAGTTGAGCAAGATGAACCCAATGATTGCAGGGCTTTAATAAAGAGAGCAGAAGTGGATACAGGATATTTCTGGTATTTCATCTCCCTCTCCAAAGGAAGGATTAGTAGGTGATTTTATATCTGATTTTTAAAATTGTACTTTGTAAGGTTTTTATGCTTTGACATAACCTGGCTGCTTGTTTGGCTTTTTTAATATATTTAAACCATGACTTAG
Seq C2 exon
GTTTTCCTATCAGACTAATGGACGGAGAGAATAAGAGAGAAGGACGAGTGGAGGTTTTTGTCAGTGGCCAATGGGGAACGATCTGCGATGATGGATGGACCGACAAGCATGCAGCTGTGATTTGCCGGCAGCTTGGCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353:ENSRNOT00000021116:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(56.7=82.1)
A:
NA
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]