GgaINT0073577 @ galGal3
Intron Retention
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56587831-56591234:+
Coord C1 exon
chr4:56587831-56588027
Coord A exon
chr4:56588028-56591092
Coord C2 exon
chr4:56591093-56591234
Length
3065 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CAGCTGTAATTTATTCTCAGGTC
3' ss Score
5.72
Exon sequences
Seq C1 exon
GTATGGAAAAAGTGTGCCTGAGAGCTCCTCAGAAGGAAACTCTGGTCCCATCTGGTTGGATGATGTCAGCTGCTCTGGGAAGGAAACAAACCTTCTGCAGTGCTCAAGGAGAGAGTGGGGAAAGCATGACTGCAGCCATCAGGAGGATGTCAGACTCATTTGCCATCCAGATAACAACAGCCATAAACTCTCACTTG
Seq A exon
GTAAGGCATCTCTTTGGTAACATCACAATGTGAGTATTGCTGTAGGCACATATTTCAGAGAAGGGTGCTCAAAATCTTACTGTTTGGCAGATGTGTACAAAGACAGATGAGGAAGGGAAAAAGTCCTCTTTTCTCTTGAAGATCATAAGTAATCAGGCTTTGTTTAAAGGAACATAAACAGCCAGAACAATAATGATCATGATCAAAATTAATTTCTAAATTAGCAAATTCAGATTCCAGAGATAATGTTCTCTAAATCTTTATCTTCATTGGATTTTACATCGATTTCGCCCTTACTAATGGTATACTGCTTCGCACTCAGCAATCTGCAAGTTCTAAGGAACTGCCCCACGTTTTGGGAAATTGGAGAGGAATCTGTGCATTGAAAAATATAAATCAATAGTAGATGCCTCTATGACCTTACATTCAGACAGTCTGAGAAAAGAGATAGAGAGAAAGTAAGTTCAGAGAATGGGAAGAAATGGTGAGAAGTATGAAAACCTTTCTGTATTACTATGGTCTATCATTTGGATTGTGCCTGGGTAAGTGGCCCCCACTTACTAACACAGGCAGAACGATACTAAACAGATCAAAGATCCAAACATCATGTTAAAAAGCTGACTATGTTGTATGAAGAAAGATGAAAAGACAGATAAGAAATCAGAACTAAATAATTACATAGAGGTATTACAGATCAAAATATATACACATGAATTCCAAAGATTTCTAAATCCACATATAATTAAACAAGAATTACGGCTATCAGACATGTAAAATAAAAGACTAGAACAATTGGGTTACTCATCTGTTCTAACAATCAGTTTCTCTTTCTTCCTTTTTTTTTTTTTTTTTAATTTGATGCATACAAATTTTGTAACTTGTCAGTATGTAAACTTTGACAAAACTGTTGCCAATATTCTTTGAAATTTAACCAAGTATATTCTAGTCGATTTTGGAGTTAGAATGAACAAGAAAGCTAGTGGAATGAGATTCACTGCTTCTACTGGAATCTAATGGATTTGTATCCCCGATTTCTTGAAGTTCCTTGGAAATTATAGACTGAAGGCTTATTTTGCAAATTAAGACAAGGATTTACTGCACAACATTGCTACATGTTCTTATAACAATCAGCACTTCCACATGCACTTTTTTTCTCTCTCCTTTTTTTTCTGGTCTTTTCCTTTACAGCCTTTTGACCTGTAAGAATCCAATGAATGTTTTATATTGCAGTACAGTTCCGTTATGTATTTTATGATGACGCTGTATCATATTTTGTAGAAAAAGATTTCCCAGACCAAAAATAACAGGAATTCAAATAATCACGGCTGTCTTTACAGATGCAAACCATCTGTGCTGCTTTGCTTAAGTTTCTATAAAATACAGTCTTAGCTGAAGGAGGTCCAGTTCAGTTAAATGCATCCATATGGTAGCATTCTCACATCTCCCATTACTGGAAAGTCATATTAGTTTTGTGCTCATAAATATATGTGTGCTAAAACACAAGCAGATGAGATAACAACAAATCAGATATAATGTATCACGAATATCTCAGGCCTCTAGCTGGGTCATGTAATATGCACCTAAATCAGATCCTTCTAGAATAACTCATCTGTCATGAAGAGGGAGTATCTAACTCTTCCTGACTGGACAAGAGACGAGGACATTATCATTGCCCTTCACTTTCTAGCACTTGAATGAAAGCATTTTTTCTTCCTCTAAGGATGAAATCAGTTAAAAATCGTGAGGAGATTACATAATTTGAGGAAATACACACATTAAGGGGCACTAAAAATATAATACACCATGAAAATGACAACATTTGTTTAGTAAATAATATCCTAACAGTGTAACTGAACAGAAAGTTGGTGAAGCAAATACTTGTAACTGTTTGGGCAGTATGAACTCCAATATGAACAATATACTTTAAATTACATTTGAAGCAAAACTACTTTAATTTTATTTTATAATCTTTCTGCATTTATTCAGCAAATTGTCAGATTTAACTAGCTCCACACCACAGTAAGGTTTGGTATACAAAGGTTAGTCATACCTTAAATTAATCAGAATCAGATTTCAAATAATGATGTATCAAGATACTCTTATTTAAGAGCAAAATTATTATTTTTTCATCCTTACAGGGTTAGACAAAAGTAGGAACAGGTTAAAAGGATGTGGAACAGGCTTCCCAAGTATTCAAAACAAGGAAGTCTAATTAGAGTCTTAAAGACTATTAAGTATGATACAGAAGAAGATTCAAAATGTGATTCCTTCACTTAAAGAGTACAAAGAGACCTCAAATGAATTTGTAACTCTTTTAAGGATTCTTGCATTGCCAGCATACTATAAAGTAGTTTAATGGAAAGGAGAATCAAATACATACTTTGCTTAATGATTCAAAACCTAACTACAGGCCGAGCACTGAACAACCCACAGTCAATTAAGTCTGATTAATCCACAAGTGAGAATTTGTAGTATAAGCATTTCTGAATAAGCAATCAATTTAAATGCTAGAAAAATAGTCACACTGTAGTCTATAATAACGTGCTGTAGATCATTATGCTTTCACACAAAATATGCTACAGAGCACATATAACAAGTAAGTAGTAACTGAAGTTCAACAAAGTGCTGTACTTTTTTTGCTGAGATTGTGGTAAGATGTGTGGCATCAATCAGTTTGAGAATGGATTTATGAACTAAGGTATAGTTGAATTCATCCACAAAGATTCTGCAAGGGAAATGTGTCCCATGAATGGCCACCTGATAAAAGATACCTCAGGTGCCTTTGCCGTTATGAGGAAAATTGTTCTGTTACTACTGTGGTGAAGCTATGCATTATGCTGTATGCACTGTAAAGTTCAAAGCACAAGGATTACAATAATATTTCACATTGTTTTATAATTTGTACTGACTGCTTCCTTTTGTCAGCCAGGGAAAAGTAAAAGACAAACGGCTGACATAAGACTTGCTGAACAGTTGACTCTATGTGCTCATTGTGATGGAAATAACTTAAAAGTACTCATTCTTGTTTCTGTTGTTGTGGGTTAACAGCTGTAATTTATTCTCAG
Seq C2 exon
GTCCTCCCATCAGGCTGATGGATGGTGAGAATAAGAAGGAAGGACGCGTAGAGATTTTTTTCAATGGTCAGTGGGGCACGATTTGTGATGACGGATGGTCTGATAAGGATGCAGCTGTAGTTTGTCGACAGCTTGGCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004:ENSGALT00000019591:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(56.7=82.1)
A:
NA
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]