GgaINT0042702 @ galGal3
Intron Retention
Gene
ENSGALG00000005156 | F1NVZ2_CHICK
Description
NA
Coordinates
chr6:16996627-16997710:-
Coord C1 exon
chr6:16997511-16997710
Coord A exon
chr6:16996769-16997510
Coord C2 exon
chr6:16996627-16996768
Length
742 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
CCTGTGTTTTTATCCTGTAGGAC
3' ss Score
11.89
Exon sequences
Seq C1 exon
TGGTCCTGCTACCCTGGCCTCTGAAGCGGACTATGCTGCTGGCCAAGGCTTTATCTTGCTGGATGATGTGGCTTGTGTGGGCACAGAGCTCTCCCTCCTGGACTGTCCCCATAGCAATTGGGGGCAGCACGACTGCTCACACGCTGAGGACGTGGGAGTTCACTGTTCTCCAGAGAGCAACACAGTCACTGGCAGCCTGG
Seq A exon
GTAACTTGACTTGTGCCTTGCTCTGGACAGAGGGAAAACATCACTTTCTGGTCTGATCCTTTGGAAACTTTGGCAGATGTGTGAGCTTTCCCTGGGCTGCCTCAGTGAGAACTGGTTTTTGAGAAGGATTCATAGGAATAAGCCCTGGCTGTTTTGGGACAGAGCCTTAGAGCTGTGGTTCTTCAAGATGTATAGCCAGACCTGTAGAGAGATGGAAATTGAAGAGAACTGTGTTGAAATTTAGTTCTGTTCTTTTCTGAACAGAAAACTCTGTTTTCTCTATTGCAGGAAATTTTCCAATTTGTCATCCTTTTTTTTTTTTTTTTTTTAATTGAAATACATACCATCCAATTTTTTGTTGTTGTTTTTCCTGGATGTAGAACACTTTTCTTGCCTAGAATAATGTAATTGTTTTTATAATCTAATGGATTTCTTTCCAAGGCATGTTTAAGCTTGTCTGCTCTTGGCTCAGCAGTTAATAACTTTCTTTCTGTTCTTGTTCTCCTCTTTACTTAACTTTCAGAAATATGATCTAATAATTTCCAGTGTGTATTTAATAAATTAATATGCACCAATTTTGCAAGGAGGTGAAATGAGGGACATGGTTGTCATATAGATCAGCACTCTCCTCCTTCTCATCTCCTCCTCATCTCCTCAGTTTTTCCTATAAAAACTAAGTTCTGGGCACCTCATGCTCTTTGGTATTTTTGCTTGCAGCAACCCCTGTGTTTTTATCCTGTAG
Seq C2 exon
GACCTCCTGTGCGGCTGGTGGATGGAGAAAGCACCAAGGAGGGACGGGTTGAAGTATTCCTGAATGGACAGTGGGGCAGCGTCTGTGATGACGGCTGGACAGACAGAGATGCTACAGTAGTTTGCAGGCAACTGGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005156:ENSGALT00000008280:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=82.4)
A:
NA
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTGCTACCCTGGC
R:
CTGAATCCCAGTTGCCTGCAA
Band lengths:
342-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]