DreEX0068562 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35275507-35279576:+
Coord C1 exon
chr20:35275507-35275583
Coord A exon
chr20:35277496-35277534
Coord C2 exon
chr20:35279460-35279576
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTCACATGAAGCGC
3' ss Score
6.44
5' ss Seq
CGTGTAAGA
5' ss Score
5.04
Exon sequences
Seq C1 exon
GCGTGAAGCACCAGGATTCCCAAAATTCCTTTTTGGCTTTCCTCAATGCGCCCACTTCTGCACTGGATCAGTTTGAT
Seq A exon
CGCTCACCCTCTTTTGGTCCCGGAAGCAAAACCAGACGT
Seq C2 exon
CTTGACTCTGCAGATTTCACCCCTTCCAACACTCCATCCAGAGATGAAGACGCAAGATCTCGCCGTATTTCACGCTCTCGCTCACCCTCCACCGCCAGTGACATGGAGCCTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
PF059116=DUF869=PD(3.4=38.5)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000040456fB5723
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCACCAGGATTCCCAA
R:
ATGGAGTGTTGGAAGGGGTGA
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]