DreEX0068556 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35275507-35277534:+
Coord C1 exon
chr20:35275507-35275583
Coord A exon
chr20:35275788-35275835
Coord C2 exon
chr20:35277496-35277534
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTGTTGTCTATCAGGAC
3' ss Score
10.13
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCGTGAAGCACCAGGATTCCCAAAATTCCTTTTTGGCTTTCCTCAATGCGCCCACTTCTGCACTGGATCAGTTTGAT
Seq A exon
GACTCATTTTCTTCCTCTTCATCTTCTTTAGTTGAATTTTGGGAAGAT
Seq C2 exon
CGCTCACCCTCTTTTGGTCCCGGAAGCAAAACCAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'24-26,'24-25,25-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.250 C2=0.974
Domain overlap (PFAM):
C1:
PF059116=DUF869=PD(3.4=38.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000113773fB5721
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCACCAGGATTCCCAA
R:
GGTTTTGCTTCCGGGACCAAA
Band lengths:
108-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]