GgaEX0013457 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13305697-13313997:+
Coord C1 exon
chr3:13305697-13305773
Coord A exon
chr3:13306908-13306955
Coord C2 exon
chr3:13313878-13313997
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTCATTAAAATAGGAT
3' ss Score
8.18
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GTGTAAAGCACCAAGACTCACAGAATTCTTTCTTGGCATTTTTGAATGCGCCTACCTCTGCTCTGGATCAATTTGAA
Seq A exon
GATTCCTTTTCCTCTTCTTCATCCTCATTGATTGATTTTATGGATGAC
Seq C2 exon
ATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'24-31,'24-28,25-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACCTCTGCTCTGGATCA
R:
TGGTTCAATTTCACTAGCCGT
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]