RnoEX0018985 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98403148-98419232:+
Coord C1 exon
chr13:98403148-98403224
Coord A exon
chr13:98404213-98404260
Coord C2 exon
chr13:98419149-98419232
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTGCTGAATTCGTTAAATAGGAT
3' ss Score
6.34
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GTGTAGAGCACCGAGACTCACAGCACTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq A exon
GATTCCTTTTCTTCTTCCTCATCTTCACTGATTGATTTTTTGGATGAC
Seq C2 exon
ATTGCAGACTCTGCTCCGCTTCCAGTTCACACACCAACTTTAAGGAAAAAGGGATGCCCAGCTTCAGCTGGTTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_MULTIEX3-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGACTCACAGCACTCTT
R:
CTGAAGCTGGGCATCCCTTTT
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]