RnoEX0018980 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98404213-98408456:+
Coord C1 exon
chr13:98404213-98404260
Coord A exon
chr13:98408284-98408295
Coord C2 exon
chr13:98408418-98408456
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTACTGTTTTTATCCTGCAGCTT
3' ss Score
11.03
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATTCCTTTTCTTCTTCCTCATCTTCACTGATTGATTTTTTGGATGAC
Seq A exon
CTTTTCCTGGAT
Seq C2 exon
CGCTCTCCGTCCTGTACTCCAGCTGGCAAAGGCAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000082844fB2727
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTCTTCTTCCTCATCTTCACT
R:
ACGTCTGCCTTTGCCAGC
Band lengths:
84-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]