RnoEX0018984 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98399853-98419232:+
Coord C1 exon
chr13:98399853-98399944
Coord A exon
chr13:98403148-98403224
Coord C2 exon
chr13:98419149-98419232
Length
77 bp
Sequences
Splice sites
3' ss Seq
GAGTTGCCACTGTTTTCTAGGTG
3' ss Score
7.45
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAACTGAAAGATTCAGAGAAGAAGAACTTGGAACTGTTGTCCGAAATCGAGCAGCTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGG
Seq A exon
GTGTAGAGCACCGAGACTCACAGCACTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq C2 exon
ATTGCAGACTCTGCTCCGCTTCCAGTTCACACACCAACTTTAAGGAAAAAGGGATGCCCAGCTTCAGCTGGTTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_MULTIEX3-1/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.146 C2=0.443
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=90.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGAAGAAGAACTTGGAACTGT
R:
GTGGAAAACCAGCTGAAGC
Band lengths:
159-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]