BtaEX6068138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30740872-30766350:-
Coord C1 exon
chr16:30766259-30766350
Coord A exon
chr16:30763817-30763893
Coord C2 exon
chr16:30740872-30740955
Length
77 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCTGCTGTCTTCTAGGTA
3' ss Score
7.94
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAACTAAAAGATTCAGAGAAGAAGAACTTGGAACTACTATCAGAAATCGAACAACTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGG
Seq A exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq C2 exon
ACTGTAGACTCTACTCCACTTCCAGTTCATACACCAACCTTAAGGAAAAAGGGATGCCCTGGTTCAACTGGCTTTCCATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'28-46,'28-39,29-46=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.154 C2=0.521
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=90.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCAGAGAAGAAGAACTTGGA
R:
TGGAAAGCCAGTTGAACCAGG
Band lengths:
161-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]