GgaEX1014016 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13303463-13310346:+
Coord C1 exon
chr3:13303463-13303554
Coord A exon
chr3:13305697-13305773
Coord C2 exon
chr3:13310308-13310346
Length
77 bp
Sequences
Splice sites
3' ss Seq
AACGTGCTGCTGTTTTCTAGGTG
3' ss Score
10.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAATTGCAAGAATCAGAGAAGAAGAATTTGGAACTGTTGACAGATATTGAAAGGCTGAAGAAGGAGACAGAAGAACTTAGATCAGAAAAGG
Seq A exon
GTGTAAAGCACCAAGACTCACAGAATTCTTTCTTGGCATTTTTGAATGCGCCTACCTCTGCTCTGGATCAATTTGAA
Seq C2 exon
CGCTCTCCTTCCTGTATTCCAGCTAACAAAGGCAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'23-29,'23-27,24-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.135 C2=0.513
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=90.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGAATCAGAGAAGAAGAATT
R:
ACGTCTGCCTTTGTTAGCTGG
Band lengths:
127-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]