MmuEX6029641 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182044154-182064511:+
Coord C1 exon
chr1:182044154-182044245
Coord A exon
chr1:182047798-182047874
Coord C2 exon
chr1:182064428-182064511
Length
77 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCTGCTGTTTTCTAGGTA
3' ss Score
7.3
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAACTGAAAGATTCAGAGAAGAAGAACTTGGAACTGTTGTCCGAAATCGAGCAGCTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGG
Seq A exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGACCAATTTGAA
Seq C2 exon
ATTGCAGACTGTGCTCCACTTCCAGCTCACACACCAACCTTAAGGAAAAAGGGATGCCCGGCTTCAACTGGCTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'32-39,'32-34,34-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.143 C2=0.278
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=93.5),PF041117=APG6=FE(26.1=100)
A:
PF041117=APG6=FE(22.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCAGAGAAGAAGAACTTGGA
R:
TGGAAAGCCAGTTGAAGCCG
Band lengths:
161-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: