GgaEX1014016 @ galGal4
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11753926-11764460:+
Coord C1 exon
chr3:11753926-11754017
Coord A exon
chr3:11756160-11756236
Coord C2 exon
chr3:11764341-11764460
Length
77 bp
Sequences
Splice sites
3' ss Seq
AACGTGCTGCTGTTTTCTAGGTG
3' ss Score
10.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAATTGCAAGAATCAGAGAAGAAGAATTTGGAACTGTTGACAGATATTGAAAGGCTGAAGAAGGAGACAGAAGAACTTAGATCAGAAAAGG
Seq A exon
GTGTAAAGCACCAAGACTCACAGAATTCTTTCTTGGCATTTTTGAATGCGCCTACCTCTGCTCTGGATCAATTTGAA
Seq C2 exon
ATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.218 C2=0.850
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=90.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTGACAGATATTGAAAGGCTGA
R:
TGGTTCAATTTCACTAGCCGT
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]