DreEX6052906 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8288164-8289101:+
Coord C1 exon
chr17:8288164-8288255
Coord A exon
chr17:8288704-8288780
Coord C2 exon
chr17:8289063-8289101
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATATAATGTTTTTTTTCCAGGTG
3' ss Score
10.7
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAAACTGGAGGAGTCGGAAAAGCAAAACCAGGACCTGCAGGCAGAGATCCAGAGGCTGAAACAAGAAACGGACAATCTGCGCATGTCTAAAG
Seq A exon
GTGTCAAGCACCAAGACTCCCAGAATTCCTTCCTGGCATTCCTCAATGCTCCAACCTCAGCTCTGGATCAGTTTGAT
Seq C2 exon
CGCTCCACTGCCAGTGGGCCGGCTGGTAAAGGCAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-'21-25,'21-24,22-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.577 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.5=100),PF088265=DMPK_coil=PD(47.5=90.6)
A:
PF0157614=Myosin_tail_1=FE(23.8=100)
C2:
PF0157614=Myosin_tail_1=PD(1.9=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGTCGGAAAAGCA
R:
CGTCTGCCTTTACCAGCCG
Band lengths:
127-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]