HsaEX6037129 @ hg19
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:1737]
Coordinates
chr1:227235628-227260000:-
Coord C1 exon
chr1:227259909-227260000
Coord A exon
chr1:227257478-227257554
Coord C2 exon
chr1:227235628-227235711
Length
77 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCTGCTGTCTTCTAGGTA
3' ss Score
7.94
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAACTAAAAGATTCAGAGAAGAAGAACTTGGAACTACTCTCAGAAATCGAACAGCTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGG
Seq A exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq C2 exon
ACTGTAGACTCCACTCCACTTTCAGTTCACACACCAACCTTAAGGAAAAAAGGATGTCCTGGTTCAACTGGCTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776-'29-36,'29-32,30-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.152 C2=0.583
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(47.5=93.5),PF041117=APG6=FE(22.7=100)
A:
PF041117=APG6=FE(19.7=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCAGAGAAGAAGAACTTGGA
R:
TGGAAAGCCAGTTGAACCAGG
Band lengths:
161-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)