RnoEX0018970 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98403148-98419232:+
Coord C1 exon
chr13:98403148-98403224
Coord A exon
chr13:98408418-98408456
Coord C2 exon
chr13:98419149-98419232
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTCTCTCTGTTGAAGCGC
3' ss Score
9.2
5' ss Seq
CGTGTAAGA
5' ss Score
5.04
Exon sequences
Seq C1 exon
GTGTAGAGCACCGAGACTCACAGCACTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq A exon
CGCTCTCCGTCCTGTACTCCAGCTGGCAAAGGCAGACGT
Seq C2 exon
ATTGCAGACTCTGCTCCGCTTCCAGTTCACACACCAACTTTAAGGAAAAAGGGATGCCCAGCTTCAGCTGGTTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'39-45,'39-41,43-45
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.477 C2=0.443
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGCACCGAGACTCACA
R:
TTGGTGTGTGAACTGGAAGCG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]