GgaEX0013458 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13305697-13313991:+
Coord C1 exon
chr3:13305697-13305773
Coord A exon
chr3:13310308-13310346
Coord C2 exon
chr3:13313878-13313991
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTTCTTTGTTAAAGCGC
3' ss Score
7.81
5' ss Seq
CGTGTAAGA
5' ss Score
5.04
Exon sequences
Seq C1 exon
GTGTAAAGCACCAAGACTCACAGAATTCTTTCTTGGCATTTTTGAATGCGCCTACCTCTGCTCTGGATCAATTTGAA
Seq A exon
CGCTCTCCTTCCTGTATTCCAGCTAACAAAGGCAGACGT
Seq C2 exon
ATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX1-2/4=C1-4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.513 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAATGCGCCTACCTCTGC
R:
TGAATGGAGGTGAGACTTGGT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]