DreEX0069511 @ danRer10
Exon Skipping
Gene
ENSDARG00000104440 | si:dkey-173l11.5
Description
si:dkey-173l11.5 [Source:ZFIN;Acc:ZDB-GENE-110406-4]
Coordinates
chr7:52946026-52958179:+
Coord C1 exon
chr7:52946026-52946296
Coord A exon
chr7:52950936-52951047
Coord C2 exon
chr7:52957932-52958179
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTAATATGTTTCAATTTAGGTG
3' ss Score
9.28
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGAAATCTTGCTGAATTTATATTTGAAAGAATGTGAAGTAGACTGCAGTAGTCTTTAGAAGAGCTGCAGCCTTGGATGTTGCGTTTATGTAAATCCCACAGCCCTCAGGCAACCCACTTTATAGATTACAAATATCTCCAGTAAAGGCATTTTAAACAGCTCGCACGATAGCATTGGAGTCTAAACAACCAGTTAGGTGATATCTCAAAGACCTTTCAAGACAGAGACAATGGTGACTGTGCGATTGGGAACCATTTTTTTGTTTTATAAG
Seq A exon
GTGTTGTCATGTGGATTGGCAGAGGAGTCATGTACTCCTGGATTTGAGTCGAATCTGCTGGTTTTTAAGGTCCACAAAGATCACCTTCACAGGGGCGAAAGGCTCGGAAGAG
Seq C2 exon
TCCGTTTTAACACATGCGATAGACGAACAAGAGTCTATTTTCAGTCCACTGATCAGGAGATTGATCTGAACAGGGATGGGACTCTGATGATGAGGAGGTCAGTGACTCTTCATGAAGGCTTCAAGGAGTTTTCAGTGACTGCATGGGACTCCAGTGGCAAAAAGCACACGACCTCTGTCAGAGTTGAGCGTGTCCGTTATCTCGGGAGTAATGACGTGAATAACTTAAGGAATACCTCCTCTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104440-'0-2,'0-0,1-2
Average complexity
ME(0_1-1_2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(30.8=73.7)
C2:
PF087586=Cadherin_pro=PD(68.1=82.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAATGGTGACTGTGCG
R:
GGACACGCTCAACTCTGACAG
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]