DreEX0069512 @ danRer10
Exon Skipping
Gene
ENSDARG00000104440 | si:dkey-173l11.5
Description
si:dkey-173l11.5 [Source:ZFIN;Acc:ZDB-GENE-110406-4]
Coordinates
chr7:52946026-52958179:+
Coord C1 exon
chr7:52946026-52946296
Coord A exon
chr7:52952624-52952661
Coord C2 exon
chr7:52957932-52958179
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTAAGAAGGGAAGTGTTAGTTT
3' ss Score
-16.5
5' ss Seq
TTTGTACAA
5' ss Score
-12.06
Exon sequences
Seq C1 exon
AGAAATCTTGCTGAATTTATATTTGAAAGAATGTGAAGTAGACTGCAGTAGTCTTTAGAAGAGCTGCAGCCTTGGATGTTGCGTTTATGTAAATCCCACAGCCCTCAGGCAACCCACTTTATAGATTACAAATATCTCCAGTAAAGGCATTTTAAACAGCTCGCACGATAGCATTGGAGTCTAAACAACCAGTTAGGTGATATCTCAAAGACCTTTCAAGACAGAGACAATGGTGACTGTGCGATTGGGAACCATTTTTTTGTTTTATAAG
Seq A exon
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq C2 exon
TCCGTTTTAACACATGCGATAGACGAACAAGAGTCTATTTTCAGTCCACTGATCAGGAGATTGATCTGAACAGGGATGGGACTCTGATGATGAGGAGGTCAGTGACTCTTCATGAAGGCTTCAAGGAGTTTTCAGTGACTGCATGGGACTCCAGTGGCAAAAAGCACACGACCTCTGTCAGAGTTGAGCGTGTCCGTTATCTCGGGAGTAATGACGTGAATAACTTAAGGAATACCTCCTCTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104440-'0-2,'0-1,2-2
Average complexity
ME(0_1-1_2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087586=Cadherin_pro=PD(68.1=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTGACTGTGCGATTGGG
R:
AGAGTCCCATCCCTGTTCAGA
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]