DreEX0069889 @ danRer10
Exon Skipping
Gene
ENSDARG00000090871 | si:dkey-210j14.4
Description
si:dkey-210j14.4 [Source:ZFIN;Acc:ZDB-GENE-131121-333]
Coordinates
chr3:52413036-52417715:-
Coord C1 exon
chr3:52417609-52417715
Coord A exon
chr3:52415302-52415419
Coord C2 exon
chr3:52413036-52414023
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTGAAATTCTTTAGCCA
3' ss Score
3.49
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAACTGGACAACCTCCCACAATCGACAATGTGTTTGGTAAGGAATGGTGCATGAACCTCTGGAGACAGGAGGAGTCCAGGGTTGGAGAGCAAGAGGATGCACAAAAG
Seq A exon
CCAATAGATTTGCTGGGTGAAGAACCAGATGTGATTATGATTAAGGATGAGTCGATGAAGAATGCCAGTTGCTCTTTAAACAGTATACCGGAGGACAACAAAAGCAGCAGTCTGACAG
Seq C2 exon
GACCAGCGATGTCCAATGATGAGAGATGTGGAGACCGGAACTCTGATGATTATATCACATACACTGTGCCTTCAGACGAACAACCCCAACCGAACATACAGCAGCCACAACCAGAAGAACAAAATCTTCATGGGACAGTTCATGCGCATGGACACATTACGACAGGTGTAAATTTCAACCACATAAAAGTTGAAGCACAAAGGTTGAAATACAGGTGTGTGTTCTGTGACAGACCCTTTAGATATATAAGCCACTTGCAAAGACATATGCGGAAACACTCTGGAGAAAAACCATACATCTGCGCAGTCTGTGGTCGACGGTTCGCTCAGAAAACGTATCTCACAACTCACAAACGCACACACTCCGGCGAAAGGCCGTATGCTTGCATTGATTGCGGAAAGACTTTCTCTCAGAAAAGCTCTCTAAACGTGCATCTCCGTTGCCACACTGGAGAGAAGCCATTTAGCTGCTCGAAGTGCGGCAAAAGCTACGCGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090871-'1-5,'1-1,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.692 C2=0.314
Domain overlap (PFAM):
C1:
PF152941=Leu_zip=PD(2.5=5.6),PF154561=Uds1=FE(41.2=100),PF073348=IFP_35_N=PD(0.1=0.0)
A:
PF154561=Uds1=PD(2.4=5.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.8),PF134651=zf-H2C2_2=WD(100=14.8),PF087906=zf-LYAR=WD(100=14.8),PF134651=zf-H2C2_2=WD(100=14.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAACCTCCCACAATCG
R:
TGTCCATGCGCATGAACTGTC
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]