DreINT0143992 @ danRer10
Intron Retention
Gene
ENSDARG00000090871 | si:dkey-210j14.4
Description
si:dkey-210j14.4 [Source:ZFIN;Acc:ZDB-GENE-131121-333]
Coordinates
chr3:52415302-52417715:-
Coord C1 exon
chr3:52417609-52417715
Coord A exon
chr3:52415420-52417608
Coord C2 exon
chr3:52415302-52415419
Length
2189 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTTAATTTGAAATTCTTTAGCCA
3' ss Score
3.49
Exon sequences
Seq C1 exon
AAACTGGACAACCTCCCACAATCGACAATGTGTTTGGTAAGGAATGGTGCATGAACCTCTGGAGACAGGAGGAGTCCAGGGTTGGAGAGCAAGAGGATGCACAAAAG
Seq A exon
GTTTGTTTCACATACTTTTGCATTTAAAGTTTCCTGAGGGTGTAGTTTGATGTACATTAGGTGTCATTTGTTTTTCATTTGAATATTAAAGAAAACTTTTGTAGTAGCAAATGTGGTTCTTGGTGATCATAAAATGTAAGTGAAAGGGTACTACAGAGGCGAAACAAAACAAAAAAAGGCCATAAACTGAAAAATCTAAATCCCATTTCTCTTTTGGCATATTAGAGGACACCGTACGACAAAACTTTACGATTCAGAACTCCAAACTTTCTTGTTAGTCTAAAAACATCTACTATTGCCAGTCTGCCAAAACGACAGGTTGTGAAATGTGACATTTTATTATGTATTAGTTTGCTAATAGGTGTGTGAGCCTACTCTGGTCTTACAGTTTAGTTCAGATTATCATGTCATCAATTCTGTTCAATTTCATATCACAGAGCATTGACAATGCTTTACAAACGAGGCACAGTAAGACTGAAGGTAAAAGATAATGCTTTGCCAACTATTCTAGATCTGACAGTGATTTTTCCCCCCACAAGTTTAAGTAACTTTTATTTTAAATTCACTACAGCTTTGTCTGTTATACCAGATTGTTTTGCTATTTACTCAGTATTGGTGTGTTTTAACCTAGGATGTAAGTATCAAACACACATGCAGAAGTTTTTATTGGTGGAGACATAGAGGTTGGACAACGAAACACTGGGCAATTTAGTGTTTGAGGTTGCATGGCTAAGTTTGACCAGCCAGGTGGCCAACCTTCATTGCTCTTACTGGTAGAATGTGTAATCAGGGTGTGAAGGTTTAACTAGCTGAGTAATAGCACAGTTTTGCTTAAAATATTACAATGCACATCATTATAGGTAATATATCAGAGTTGAAAAGAGCATAAATTGTTAGTGTACATCTCATTAGCACATCTGTAAACAGGACAGCAAGTTTAGATAGCCACGGTATCCGGACTAATGTCAGCAAACCACCTAGAAGGACAAACCATATTTAACAGGAATAACTGTGGGACGTAAGAGGAATGTGTCTGAAAGGGATGTCCGGGTGCTAACCCGAGTTGTACCTAAAAAACATAAAACCACAGCTGCCAAACTCACTACACCTCAGTGTTCACCTCAACCGTGTCTCCTCTCTTTCCACCAAAACTGTTCATCGGGAGCTCCACTTAGTCAATATACATGGCCGAGTTGCTATTGCCAAAACTTTGGTCATTCGTGCCAATTACAAATGTCAGTTTCAATGGTGCCAGCAGTAAAAATCTTGGGCTGTGGACAATGTGAAACACGTATTGTTTTCTGATGAGCCCACCTTCACCATCTTTCCCACATTTGGGAGAGTTACGGTGTGGAGAATTCCCAAAGAAGCTCACCACCCAGACTTTTGCATGCCCAGAGATGGATTAGTGATGGTTTGGACTGCATTGTCATGGCATTTCTTAGGCCCAATACTTATGCTAAATGGGCAAGTCGCTGCCAAGGATTACCGAACCATTCTGAAGAACCATGTGCACTTAATGGTTTAAATATTGTATCCTGAAGGCTGTGCTGTGTATCAGGATGATAATGCAGCAATACACACAGCTGAACATGAAAATGAAGTTGAACATCTTCCATGGCCTGCGAAGTCACCAGTGCTGGACTTTTATCTGTCATTCTCAAGTCAAATTGATAGGCCACAAAAGAAGGCCCCACACCATACTAATGAGTTATTGTGGTCTAAAACTAGACATTTCAGATTCATTGTCCAACCCTGTTCACACACTTGAAAATGCACTTAAAAAAGCATTTGTCTGTTTTTTTGTATGTGTTATAACATCTTTGATAACCTTTCTGCTTTTAAGTGGTGATAAAACTTGAACACTTGAAGTCTGAATAAACTGCATTTTTATTTGTTTAAAATCTGAGGCTTAGTTCCTTGTTTTGAAATATAATATGCCCATATATAAATAGGTAAAAATTACTTGAGGGCCATCAAATTTAGATGAAAATTGTCAAAAGATCTTGAAAAAACAAAAACAACTGGCCTGGAAATATATAAAGTACTGGTAACCACTGACCTGCGTTTTATTTCTCACCAAGCACCAATGTCCTACTGAAGAAAAAGACACATGTAAATGTTTAATATGGTTCATGTTTGGGTGAACTATTGCTCACCAGTTCTTTCTTTAATTTGAAATTCTTTAG
Seq C2 exon
CCAATAGATTTGCTGGGTGAAGAACCAGATGTGATTATGATTAAGGATGAGTCGATGAAGAATGCCAGTTGCTCTTTAAACAGTATACCGGAGGACAACAAAAGCAGCAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090871:ENSDART00000125455:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF152941=Leu_zip=PD(2.5=5.6),PF154561=Uds1=FE(41.2=100),PF073348=IFP_35_N=PD(0.1=0.0)
A:
NA
C2:
PF154561=Uds1=PD(2.4=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]