DreEX0070950 @ danRer10
Exon Skipping
Gene
ENSDARG00000096941 | si:dkey-77f5.8
Description
si:dkey-77f5.8 [Source:ZFIN;Acc:ZDB-GENE-131120-149]
Coordinates
chr15:1044376-1047589:+
Coord C1 exon
chr15:1044376-1044537
Coord A exon
chr15:1046583-1046617
Coord C2 exon
chr15:1046747-1047589
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTTTTTCTGTATTAGAGG
3' ss Score
7.63
5' ss Seq
TTTGTGCGT
5' ss Score
1.02
Exon sequences
Seq C1 exon
ATTGCTTAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGACGTGAGGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCACAGTTAAGCTTGAAGAGATTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAACAGACAG
Seq A exon
AGGGCTGGGCCGCAGGTTTCGAATCTCCCGGGTTT
Seq C2 exon
ACCCGGTTGTGCTGAAGGAGGAGACTGAAGAGATCGTTAATCTTGATCAGCAGGAAAACCTGAAAGTTTACCGGTGGATTCACACTGGAGAGAAACCTCACACTTGCTCTCACTGTGGAAAGATTTTTGTTCATAAAAGGTCTCTTGATGCCCACATGGAAACTCACACTAGAGTGAAGCGTTTTACCTGCCATACATGTGGAGTAAGGTTCAGTCAACGAGGACACTTCACATCCCACATGTTGACTCACTCCGGAGAGAAACCTTTCGCCTGCCTTCAGTGTGGAAGGAGTTTTGCTGAAAATAAAAACCTGAGAGCCCACATGAGGATTCACACCGGAGAGAGACCATTTACCTGCCATACGTGTGGAAAGAGTTTCACTCAACAGGGACACTTTGCATCCCACATGTTGACCCACTCCGGACAGAAACCTTTCGCCTGCCTTCAGTGTGGAAAGAGTTTCAGTGAAAAAAAAAACTTGAAAGCCCACATGAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096941-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.583 C2=0.077
Domain overlap (PFAM):
C1:
PF0403211=Rpr2=PU(1.4=2.0)
A:
NO
C2:
PF0403211=Rpr2=PD(97.1=24.1),PF134651=zf-H2C2_2=WD(100=9.2),PF127282=HTH_17=WD(100=12.8),PF0013017=C1_1=WD(100=19.5),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=PU(27.0=3.5)
Main Inclusion Isoform:
ENSDART00000157310fB5906
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACTGAAGAAGCTTTCACAGT
R:
TCAGTCTCCTCCTTCAGCACA
Band lengths:
114-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]