DreINT0146768 @ danRer10
Intron Retention
Gene
ENSDARG00000096941 | si:dkey-77f5.8
Description
si:dkey-77f5.8 [Source:ZFIN;Acc:ZDB-GENE-131120-149]
Coordinates
chr15:1044376-1047589:+
Coord C1 exon
chr15:1044376-1044537
Coord A exon
chr15:1044538-1046746
Coord C2 exon
chr15:1046747-1047589
Length
2209 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTTATCTGTTTTCACACTAGACC
3' ss Score
8.82
Exon sequences
Seq C1 exon
ATTGCTTAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGACGTGAGGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCACAGTTAAGCTTGAAGAGATTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAACAGACAG
Seq A exon
GTTGGTTTTCATCCTTAAAGCTCCACTCACTCATTTGAGCCTTATTTAAATGTCCAGGGGTCACAGCAAGACTGAGTAAAACAGGGAACAATCAACACCGCAAGACATGTTTACCAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTACAACTGCAACAGGAAGCAGTACAAAAGCACCCACATCAAAGGAAAAAACAAACATAGCAATAAATATTCTGAAAATTAAGTACAAAGAGCTTAAAGAGCCCATATCATACATGAAATAGGGTCATATTTTGGTTGTAAGAGTCTCCAACAACAGTCTAATATGCATGCAAGGTCAAAAAACACTTTCATTATCTTGTAATCTGCATTTACTTTTACCTAATTATCTCAGCGACTCCCGTATGAATCTTCTAGTGATTCATTTGTTCCCAAACCCCTCTTTAGCGCCAGGCTAATCTGCGCTGATTGGACCGATACTGACTGCCTTCAGCGCAAGACAGAGGGAAATGCCTAGCCGCTAATTAACAATATTGAAGTAGTCACAGAGCATACACGCTTCATAGTTTAAGGCATGGATTTTAGCTGCCAGTGGATGAATGTAAATACAGACGATGGACTTGAAAATACCGACGACTAACTATTTTATTAAGCAAAAACTCCAAGAACTGGCGAGGAGATCTCCTAGCTTGTCACACTCTGCTCTTTTCACACACACACACACACACACACACACACATTGCCTTCCACCTCGGACGACAACGCACACACAAACACACACACATAACCCTCCTCAGGACAACAATGTACACACACACATTACCCTTCTCCACGGAGGTCCGTAAACAAAGCGGCATGTGTCACGTTTTTAACATGGCTTTACACGCGATATGAGAATATAGCCAGTTAACCTGAGACGGTACACGCGGTTACAAGTAACAAAACACAACTAAATACATTTGCAAGCTAGAGTAAACAAGGCAACAACTTAAATCACACATACTAATGCTGAGTTCACACCAGACGCGGCACGCCCATCAAGCGCGAGTGATTTACATGTTAAGTCAATGCAAACGCGCGAATAGACATCCTGCGGTGCTATAGGCACGAATGACGCAAATTGCGCGAATGGCACGGGGCGAATTGAGCGTTTTGCGCGTTTGAAGCGCCTAACGAGCGTTTCCCCGAATCTCTCATTTTCGAAAATCTGAACTTCAGCGTACATTCGCGCCGCGTTAACCAATCAGAAGCTTGCTCTTGTGGGGGCGTGATTGTGACGTAGAACCTGTTGTCGGTGTTCCGAGGGAAATCCTCCAGCCTTCACCGACAACAGTTCATCAAACTGGGCTTGGCTCAGTCAGAAGCACCGCTGAAAGCCTCCGTCATCCAGGTTCAGTTTCTGGAGGAGTTTATGAGCTCACAGAGCTGGATGCACCTCTGAAAGCATGTAGTAAACTTAGACACGACCCTAAACGTATCAACGCTGTTTTTCAGTCTTCATAAAGCACATAAACACTGTTATTTTCTTCATAAAATCCATGTTAGCCATTTAGCTATAGGCCCTGCCCATCACACGAATCCACGTCTGTTCTGAAGTGAATTTGACACGCGAATGAAGCTGGGTTTGACGCGCGAATGAAGCAAGTAAACTCAAATGTTCACGCGGCTATTTACGCGCGAATAGAGCGATTTATCCGCGCGTTCCGCGTCTGGTCTGAACACAGCATTACACTTGAGAAATGGAGGAAGAAACCGATCCATGTCCTGACATGTCCATCAGCACTCTTTACTGATCCTTCCTTTATCAAACTGCCGATGAAGAATTCTTTGTAGCTTGTAGTTTCCAGAAGCATTTAAACTGCTCAGGGCTGGGCTATAATGCTGAGGTTTCATGTTTGGGTAGAGACCCAATAAATATCCATCAGCACTTTGCGACTTCATTTGACCGGCGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGGCTTTTTCTGTATTAGAGGGCTGGGCCGCAGGTTTCGAATCTCCCGGGTTTGTGCGTGCACGTGAATAAGTGGACTCTTTAACAGGACTCTTTGCTGGGACAGCAGGCTTATAATCAATCATCAGCTAAGTGTGAACTCTTGAAATGGTATTGAACACTGTTTATCTGTTTTCACACTAG
Seq C2 exon
ACCCGGTTGTGCTGAAGGAGGAGACTGAAGAGATCGTTAATCTTGATCAGCAGGAAAACCTGAAAGTTTACCGGTGGATTCACACTGGAGAGAAACCTCACACTTGCTCTCACTGTGGAAAGATTTTTGTTCATAAAAGGTCTCTTGATGCCCACATGGAAACTCACACTAGAGTGAAGCGTTTTACCTGCCATACATGTGGAGTAAGGTTCAGTCAACGAGGACACTTCACATCCCACATGTTGACTCACTCCGGAGAGAAACCTTTCGCCTGCCTTCAGTGTGGAAGGAGTTTTGCTGAAAATAAAAACCTGAGAGCCCACATGAGGATTCACACCGGAGAGAGACCATTTACCTGCCATACGTGTGGAAAGAGTTTCACTCAACAGGGACACTTTGCATCCCACATGTTGACCCACTCCGGACAGAAACCTTTCGCCTGCCTTCAGTGTGGAAAGAGTTTCAGTGAAAAAAAAAACTTGAAAGCCCACATGAGGATTCACACCGGAGAGAAGCCTTTTACCTGTCATACGTGTGGAAAGAGGTTTACTCAACAAGGACACTTCACATCCCACATGAGGACTCACTCCGGAGAGAAACCTTTCGTCTGCCATCAGTGTGGAAGGAGTTTCGTGAGCAAGGAGAACATGAAGGTGCACATGAGGATTCACACCGGAGAGAAGCCTTTCAGCTGTCAACACTGTGGAAGGCGTTTCACTCAGAAAGCAGCTCTTGAAGGCCACCTGACCATTCACAGCAGAAAGATGCTCTACACCTGCCAAATATGTAGAGTGAACTACAAAACTAAACATGGCTTTAGATGTCACATGGACATTCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096941:ENSDART00000157310:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0403211=Rpr2=PU(1.4=2.0)
A:
NA
C2:
PF0403211=Rpr2=PD(97.1=24.1),PF134651=zf-H2C2_2=WD(100=9.2),PF127282=HTH_17=WD(100=12.8),PF0013017=C1_1=WD(100=19.5),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=PU(27.0=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]