DreEX0071043 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16778889-16784290:-
Coord C1 exon
chr16:16784123-16784290
Coord A exon
chr16:16783907-16784039
Coord C2 exon
chr16:16778889-16778960
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTACCTGTGCAAAGGTG
3' ss Score
6.08
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
TTTGAGGTAAAACTGCATCATAATTATGGCAATCATAATTATGAACCTGAAAGCACAGCTGAGCTTGACATTGATGTAGGACAACAGAAAAATGCAAAAGTAGCCTTACAAGTTGTGGACAAAGCCATTTACGCCTTGGGGGCTCAAAACAAACTCACCCAGAAACAG
Seq A exon
GTGTTTGCCTCTATGAAGTCTTATGATCTGGGGTGTTCTTATGGCGGTGGTGAGAATACAGCAGCTGTTTTTAACGATGCTGGCCTGGCCTTCATCTCTCACTCCACCACGATTCGTTCAGCGATGAGAAAAG
Seq C2 exon
GTTTCAGCTGTGAGTCTGGTTTTAGACGCAACAAACGTGAGATTGATGTTCAAGCAGAAATGGCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'16-14,'16-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(32.4=80.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAAAACTGCATCATAATTATGGC
R:
TTTCTTGCCATTTCTGCTTGAACA
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]