GgaEX1012095 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:53189-53907:-
Coord C1 exon
chr16:53752-53907
Coord A exon
chr16:53359-53485
Coord C2 exon
chr16:53189-53205
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGCCCCATTCTGTGTCCCAGGTG
3' ss Score
7.39
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGCAGGTGAAGGTCCCTCCACGTGGGACCACCCTTCGCCCTCAGGACCCACTGAAGGTGACAGTGACAACGGGGACTCCAGTGACAGTGGCCATTGGGGCCATCGACACCACAGTGCTGAATCTGGAACCACGGCACCGCCTGAACACTGCCAAG
Seq A exon
GTGGAGGCAGCTCTGGGCAGCAGCGATTTGGGGTGCAGCCCCGAGGGCGGCCCCGATGCTGTTGGGATCTTTGGGGCCGCAGGACTCGTGCTGGGACTGCAGGGTGGCAGCCCCACAGTGCCGGCAG
Seq C2 exon
CCCCCCACTGTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.256 C2=1.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(29.7=78.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]