DreEX0071050 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16759308-16761216:-
Coord C1 exon
chr16:16761126-16761216
Coord A exon
chr16:16759499-16759573
Coord C2 exon
chr16:16759308-16759410
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTGATTTCCTATGCAACAGCTG
3' ss Score
4.68
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TCACACACAGGGGAGGAAGCTCTCTGGAATGGCCATTGCTGATATTACTCTACTTAGTGGTTTTGAGGCAATCAATACAGATCTGGAAAAG
Seq A exon
CTGAAAGGCCTGGTGGACAAATATATTTCTCACTATGAGGTCACACGTGGAAGAGTACTGTTGTATTTCAATGAG
Seq C2 exon
ATAGATGGAGGTGAAGCCTGTATTGCATTTGGAGCTGAGCAAAGTGTGCCCATTGGTTTAGTTCAACCTGCTCCTGCTTTGTTTTATGATTACTATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'43-38,'43-37,44-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(24.4=71.0)
A:
PF076779=A2M_recep=FE(27.8=100)
C2:
PF076779=A2M_recep=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGGGAGGAAGCTCTCTG
R:
ACAAAGCAGGAGCAGGTTGAA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]