GgaEX1012083 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:45961-46706:-
Coord C1 exon
chr16:46616-46706
Coord A exon
chr16:46207-46281
Coord C2 exon
chr16:45961-46063
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCTGTCCCACAACAGCTG
3' ss Score
7.14
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GCGGAGCCCAGGGGTGGCACTGACTGGGATGGCGGTGGTGGAGATCACTCTGCTCAGTGGCTTCTCACCCCATAGAGCTGACCTGGACAAG
Seq A exon
CTGCGGGACGTGGTGGATCACTGGATCAGTCACTATGAGTTGGAAGGAAACCAGTTGGTGCTATACCTGGATGAG
Seq C2 exon
GTCCCCCCCGAGCGGCAGTGTCTCAGTTTTGGGGCCACCCAGGACGCGGCTGTGGGTCACATGCAGCCGGCAATGGCAGCCATCTATGACTACTATGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'41-54,'41-52,42-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(24.4=71.0)
A:
PF076779=A2M_recep=FE(26.7=100)
C2:
PF076779=A2M_recep=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGCACTGACTGGGAT
R:
TCATAGATGGCTGCCATTGCC
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]