DreEX0071051 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16758979-16759573:-
Coord C1 exon
chr16:16759499-16759573
Coord A exon
chr16:16759308-16759410
Coord C2 exon
chr16:16758979-16759068
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTGTCACTCCTCAGATA
3' ss Score
10.26
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
CTGAAAGGCCTGGTGGACAAATATATTTCTCACTATGAGGTCACACGTGGAAGAGTACTGTTGTATTTCAATGAG
Seq A exon
ATAGATGGAGGTGAAGCCTGTATTGCATTTGGAGCTGAGCAAAGTGTGCCCATTGGTTTAGTTCAACCTGCTCCTGCTTTGTTTTATGATTACTATGAACCAG
Seq C2 exon
ACAGGAGATGTTCAGTGTTGTACAGCGCCCCCAAGAGGAGCAAGATGGTTTCCGTCCTGTGCTCAGATGACGTGTGTCAATGTGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'44-40,'44-38,45-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(27.8=100)
A:
PF076779=A2M_recep=FE(37.8=100)
C2:
PF076779=A2M_recep=PD(8.9=25.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGGCCTGGTGGACAAA
R:
TTCTGCACATTGACACACGTC
Band lengths:
164-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]