GgaEX1012084 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:45767-46281:-
Coord C1 exon
chr16:46207-46281
Coord A exon
chr16:45961-46063
Coord C2 exon
chr16:45767-45856
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTCCCTGTCCCCAGGTC
3' ss Score
13.48
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
CTGCGGGACGTGGTGGATCACTGGATCAGTCACTATGAGTTGGAAGGAAACCAGTTGGTGCTATACCTGGATGAG
Seq A exon
GTCCCCCCCGAGCGGCAGTGTCTCAGTTTTGGGGCCACCCAGGACGCGGCTGTGGGTCACATGCAGCCGGCAATGGCAGCCATCTATGACTACTATGAGCCTG
Seq C2 exon
GACAGCGCTGCACCGTCTTCTACAACGCCCCCCAAAGGAGCAGCACCATCGCCACGCTGTGCTCCCCCAAAATCTGTGAATGCGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'42-55,'42-54,43-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(26.7=100)
A:
PF076779=A2M_recep=FE(37.8=100)
C2:
PF076779=A2M_recep=PD(7.8=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTGGTGGATCACTGGAT
R:
GCGCATTCACAGATTTTGGGG
Band lengths:
155-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]