DreEX0073005 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10730620-10733287:-
Coord C1 exon
chr11:10733099-10733287
Coord A exon
chr11:10732708-10732995
Coord C2 exon
chr11:10730620-10730708
Length
288 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTCTGTGTGTCCCAGTCA
3' ss Score
7.76
5' ss Seq
CAGGCAATA
5' ss Score
0.8
Exon sequences
Seq C1 exon
ATATGGTTTTGGACCAGCACGAGACATCGGGTCCATTGGGAGAGGAGGTGAGGAAGAAGATCCGAAATGCTCTCCTTAAACAGCACCACCATCAGAACCAGAAGAAACTGGCTAACCGGATCCCCATCGTACGCTCTTTCGCAGATATCGGCAGGAAACAGTCTGAACCTCATTCCATGGATAAAAATG
Seq A exon
TCACTACCACGAGCCATTCGTCCCCCAGTCCCTGCTGCTCTTTCTGGTCTAGGTTCAGCAGCAGTGTAAGAGACAGACAGGTGCTCTTATGCCCAGACTGGCCCCTACGATGTCCCAAGTGTGTTTCATCTCCCCAGAAACTACACCCATGCCCTTCTGCCACCCCTGCCCCAAACAGTTCCCTCATCCGACACCATAAAACACACATTCCCTTCAGCAAACGACTAAGCCCACCTTATGGCTACCACGTCATTCCCACACTGAACTTTGAGGAAGAGTCTCCATCAG
Seq C2 exon
GTCAAATGGTGTCTCCTCAGACTCAGCCCATCAATACAGAGGGTCGAGGTGAAGGCAGTCGTGAGAACAGTGCTGTTGACTTCAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.278 C2=0.800
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(24.3=100)
A:
PF075658=Band_3_cyto=PD(20.7=29.9),PF075658=Band_3_cyto=PU(23.2=46.4)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Inclusion Isoform:
ENSDART00000091923fB6086
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGGACCAGCACGAGACA
R:
ACAGCACTGTTCTCACGACTG
Band lengths:
260-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]