DreINT0151417 @ danRer10
Intron Retention
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10730620-10733287:-
Coord C1 exon
chr11:10733099-10733287
Coord A exon
chr11:10730709-10733098
Coord C2 exon
chr11:10730620-10730708
Length
2390 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTG
5' ss Score
4.16
3' ss Seq
GGGTGCTACACTGCTGCCAGGTC
3' ss Score
3.83
Exon sequences
Seq C1 exon
ATATGGTTTTGGACCAGCACGAGACATCGGGTCCATTGGGAGAGGAGGTGAGGAAGAAGATCCGAAATGCTCTCCTTAAACAGCACCACCATCAGAACCAGAAGAAACTGGCTAACCGGATCCCCATCGTACGCTCTTTCGCAGATATCGGCAGGAAACAGTCTGAACCTCATTCCATGGATAAAAATG
Seq A exon
GTACTGCTCCACACAATCCAGCATATGCATTCTTCTACATTTACCATGCATTTTGTCTTACCATCCCTTTTTAATGGTGTGTCTGCCTGTCTGTGTGTCCCAGTCACTACCACGAGCCATTCGTCCCCCAGTCCCTGCTGCTCTTTCTGGTCTAGGTTCAGCAGCAGTGTAAGAGACAGACAGGTGCTCTTATGCCCAGACTGGCCCCTACGATGTCCCAAGTGTGTTTCATCTCCCCAGAAACTACACCCATGCCCTTCTGCCACCCCTGCCCCAAACAGTTCCCTCATCCGACACCATAAAACACACATTCCCTTCAGCAAACGACTAAGCCCACCTTATGGCTACCACGTCATTCCCACACTGAACTTTGAGGAAGAGTCTCCATCAGGCAATATGATCATAGATTAGCCTGTACTCTAATAGTGCGGTCCTATTCGCAAAGTTTCAGCAAAATTTTGAGAGCAGTAAATGACCGTTATCAATGTGAAGAAGCTTAAACAGAAGCGAAATTAAAATTAGTCAATTACTTTGAGCCTTCTGTGAATAGATGCATAAATTCATGTTGAAATATCTGGATTGTGCTCATAAAAATTTGCTGAACAACGGTAAATGTGACTGTATTAATGCATAGATATGTAATATCTAGATACTGCAATCGGATGATCCCATGTCAGTGTCATTTGCATGCTCACAGGCAGATTGTGGTCTGTCTAGTTTAGTGGGCATGCAAATGTATTAAGGGTGTAATGATACACAAACTGTAATTGAACCAAAAATGTACCATATGGGTCTTTCAGTTTGCTATCTATGGAGAAACTGAATGTGATCATTCCCACTAAGCAATTTTGTATTTAACAGATGTCTAATAGACATCTAAAATTAGTCTGTTTGGCTTAAACAAGACTAAATCTGGGCTGTCAGTAAAAATTTAATAGAAATCTAAGATTAACACAAAAGTAGACAAGTAATCAAATAGACAGAATCAACAGACTTCATGTCTAGCCATTTATTCTTTTATATTTGATCACTAGTCTGTTCATAGATGTCTATTTGATTTTCAATGACAGCCTAAATTTAGCCTTGTTTTAGCTAAGCCATTTTGTTTAGACATCTATCAGACTTCTTTTACATGCAATAAGTGCTTGCTTGGTTCTTTCTTAGTCTCTTTAGCAGTGATATCAGGAAATAAACATGAATAAACATCTCATTTATTACTTAATCATAAAAAGATGGCAGTAGAAAGAAACACATATACTTAAAAGTAAACAGAAAATTTGTAATTGTAATTCTAATTGAATAGACATATACATATACAGTTTCTGGAGGACCACAGCTTTGCAGTTTTCCTTCAACCCTAATCAAAGCTCAAGAGTCTTGAACACCTTGATTAGTTGCATCAGCTGTGTTTGATTTAGGATTGGGCAAAACTGTGCAGAGCTGCAGCCCTCCATGAATTTAGTTTGAAACCTATGAGTAGACAGTTTCACAATCGGTTTTGTAAATAATATTTGGTGTTTAATAATAAAAAAAAAAGAATCAGTTTTGTGTTTATTGTTTATCTGATGCCATACCATCTTTGTGTATAATTACACCCCTAAACTGCGTAATTGTAGTAAGCAATAGTCAATACATTCCATGACTGCTCTCTAACTTAAGTACACTCAGCATTAGATTAACATTTAATCACTAAATGTGACCCAGTACCATAAAACGTGTCATATGTAGCAGGGATATATTTTTGGGAACAGATAACAATACATTAAACGGGTCAAAATGATTGATTTTTATTTAATGCCAAAAAATCATTAGATTGTTAAGTAAATATATACAGTATTATTAAGAGATATTTTGTAAAATATCTAAAAAAAATAAGCTATTTTGTAATTTTCCTTCTGTAAATATATCAAAACAGCAATATGGACTTAATGTAAATAACTGATTTTGAAAATGTGTTTTTGCAGTATTTAATTTTTTTAAACTCTTTTAGAGAACCCTTACAGCATATACACCAGTGCAAAGCTTATTTGTCAGCTCTCAGGAATGAATATAAATGTCAGTTTCAGAAAACTGAACCTTATGGTTTTATGGTCCAGGGTCGCAAATAGTTCTTAGTCTAGAGACTGATATTTGTATTAGACTTTTATATATATCCAAGCTGTTTCTTCTTCCCTCCTTCTAGATTCAGTTTGTAAATTTGATTTAGATTTAGACAATGCTAAGACTTTATAACTCACATTACTAACATGCTCCTTGAAATTATTTTTTAATGAGGTAAGTGTGCATTGGTCTTAATGCCCTTAACATTGCTTTCAACTTAATGGTCAAATATGTTTTTAATGGTCTGCTATTTATTTCTTTTGTTTTTATGGGTGCTACACTGCTGCCAG
Seq C2 exon
GTCAAATGGTGTCTCCTCAGACTCAGCCCATCAATACAGAGGGTCGAGGTGAAGGCAGTCGTGAGAACAGTGCTGTTGACTTCAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133:ENSDART00000167112:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(24.3=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]