GgaINT0048911 @ galGal3
Intron Retention
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22803388-22805825:-
Coord C1 exon
chr7:22805798-22805825
Coord A exon
chr7:22803480-22805797
Coord C2 exon
chr7:22803388-22803479
Length
2318 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGTAATGGTATTTCTTTTAGCAG
3' ss Score
5.68
Exon sequences
Seq C1 exon
AATAAGGAGGACTCTCTAAAGGAAGAAA
Seq A exon
GTAAGAGTTAAGTAAGCTTAAGACTTCCTGGTAGAAATATCCCCTGTGAGTTTTATGACTTCTATTTTAGGGTGACTTAAAGATTATTTTTTTTTCCTGTTACATTATTAAAACTATCAGAATACTACAGAAACCATATTAGTATAGAAATTATTTTAATAGTTAGAATGCTAGAGGATCTTTTTTATAAAACTAAATAAACTTAATAGAGAAAAAATAGTGGCATTGAGTAGTGTATGGGTATACTTAGCACTAAGGGGATGGTGGAACAATGATAGAACTAGGTGACACTTTAAGTTCTAATTAAAACAGAGAAGTTGAATGGCCATTTATAAGGATCTTGCATATTTAGTAATTGATGGCCTCCAACTTGTGGAAGTTGTCCCATGTTAAGACTATTAATTCCTAAATATAACATTATTTTAATGTACATTTGTTTAAGTTACAATAATATGTTCTTCTGAAATTAATCCATAATTCTTGTCATATAAAAATTCTGATACTGACTTATTTTTAACTGCTTGGTTAGGCTAACATAATAGTCATGTCTATTTTTCTGTTGTTTTCTGTTTATTTCACTCTAGTCCTAGGAAAAAGCCCACATTTCTGTTCTTGTTTTTATCTTTGTTCTGAATCTGAGAGAAAATTGAAATATTTACATTTAGTAAGATTTTTGCAAATAATTTCTGAAACATTCTGTGCCTATGCTTTCTAATCAAAGTAAAATCTATCTTGACAAGCTATCAGCTTGCTTAAAGTCTAAAAACAGATTTGTAGCATGAGATTTTTTCCTAGTGGAAAATGAAGTGTTGATTTTTGATGAAAACCAGCCTTTTCTCAGCAAGTGTTTATACTGAAAATTTGTGGCCAGAGTTAGAGAGGGATGCTGAACTGCTCAGTTTTCACAGAAGCTGGACATTGTAGTTTTCTGACCATGGCTGAGATTCTCTTGCAAGTCTCTTGTCCTGTTCAGTTTTGATCCTACAAACTGCTGTTTCCTGACTGTGGCTGAGGACATGCTTGGACTACAAATGGGTGTAACAAACATGCTGAGGGTACACGATGGCTTTTTGATTTGCCCAAACAATGTGCCTAGCTTAGGATTGTCTTTATAGTCATATGTCTTGAACATATGGTCTTTGTTAGTACTCAAGTTTGGATTGATTTTTGCCAGAATCAATGTTTTTGCATCATAAATTCTTAGTCATATGAGAGACTTTATTTGCTATGGATACAAATATATGCTGGGCACAAGATACTGATTGTTGGCCAGTTGGACTCTACAGTTATTCCTGAGTATGTGTTACAGCAGAAAGAGATAGTTGGCTTATACATTTGCTACTTTTTCCTGTGATTTTTTTTTTTTTTTTTTGGTGTTCAGAGCTATGAGCAGGCCCTGCCATGCCAGAGAGAGCGTTAAGAGTAAAGTCAGGAAGGCCCATCAACCCAGCCAGTTTGTGTTGCTGCCCTACTGCCTGCGTCACAGTGTGTGTGGTGACCTCTGGCTGTGCATGGGAGTAATGCTGACATTAAGTAAAGTATGTTTTATGTGACCTGTATTCGTTACTTAATCTTGTTTTTCTTTTTGAGCTTTTGCTGTCAAAATTTAGTTGGTCACAAGACTTACATCTGGCTTACATGAGACTGAGGTGTGTTTAATCACTTCTTATATTGAGATATTTTTTAAAGCTTCTACAAGGTACTGTACTAAATCCTTACAGGAATTTTTGAAAATGTCTTTGCCGAAACATTTGTTTTATTCCTGTCAAGTTCACAGTGTTCCATACTGAGATGAAATAATCTTAATTTCTAAACTATTTCTTATATTAGCCCACTCTTATGCTAGGTTTTGTAATATTTACATAATCAGAACGTTTTTATACTCATGAGTAAATTTATGGGTATTAGTACTCCTGTTTTATTCAGTGAGGAGTAATCTTGCAGACAGATATTTGAAGAGCTGCCAATTTGGAGCAATTAGTTAAAAAAAAAAAGCAACAAAACAAAACTATATAAATGCAGGACTTTATTCAAAAGTAACACCTCAAAAAACATAAAGCTTTAATTGACACAGAAAGATTATCTTCAGTATCCTGGGTTGTTTTATATTTTGAGTTATGTTCTCCCATTCTTAGCTGCATGTGATAAATATTCCCTTTAGAGAATGTTACTCTAAATAAGTATTTAAATAAATGTCATGTTTAGATATCATATACACGTGATATGGATGTCACTCTTTAATTCTACCAACTATTTCATTAAATCTTGCTTTATTTATAGAAGTGAATGTTAGTATTCTGTAATGGTATTTCTTTTAG
Seq C2 exon
CAGGTCAGATTGTTTCCCCACAATCTGCTCCAGCCTGTGCTGAGAACAAAAATGATGTGAGCAGAGAAAATAGCACGGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120:ENSGALT00000018117:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.710
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(3.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]