DreEX0073050 @ danRer10
Exon Skipping
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32458248-32474705:-
Coord C1 exon
chr2:32474559-32474705
Coord A exon
chr2:32468649-32468774
Coord C2 exon
chr2:32458248-32458406
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTTCTCACCTCCAGTCC
3' ss Score
10.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTTCATGAGAGGGTTCACAAGCTCCCTCTCTCTCTCTCTCTCTCTTCCTCTCTATCTGCCTGACTAAAAGCGTTCCTAATAGTCGTAACTCCATCATCTTTTTGATAAATATTTAGCATTTGGAAAGCTGGACACCTCACATGACAG
Seq A exon
TCCCTCCTCCTTCTCTGTGTCTCTGGCTTTTTCTGCTTTTCGGTGGCTGTTTGGCTTCAGTGGGACTTTGCCATCGCTCTACAATGACTGCTGTAGTTGTAGTCGTCCTGCAGTGAGCATTCCGAG
Seq C2 exon
GTTATGCTGCCCGAAAGTTCCCAGTTGAGTCTGAGTAAAAGAGAAAAGGGCTAAAGCCGGAGCACTTTAAAGCATCTCCCACAAATCTGACCATAAGCAATGAGTGACCCTCAGGATGCCAGTGACGTCACTTCTGCCGCAGGCTTGACCAGACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGACTAAAAGCGTTCCT
R:
AAATGTCTGGTCAAGCCTGCG
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]