DreEX0073059 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45169553-45171887:-
Coord C1 exon
chr5:45171702-45171887
Coord A exon
chr5:45171385-45171498
Coord C2 exon
chr5:45169553-45169714
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACAGTATTGTTTCATTTTAGGTG
3' ss Score
10.04
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CGCATGAATGCCACCTGGTCCTCCTTATCAAAGAAGGAATGCCTGAAATATGGAGGAGAGCTGGTGGGTAAAGCCTGTGAATTTGTGCCCGACATCACCCTCATGTCCTTCATCCTTTTCTTTGGCACCTACACCTGCTCCATGTGTCTGAAGAAATTCAAGACCAGTCCCTTCTTCCCTACTACT
Seq A exon
GTGAGGAAGCTCATAAGTGACTTTGCTATTATCCTGGCCATTTTGATCTTCTGTGGTGTCGATGCTCTGGTTGGGGTTGAAACACCAAAGCTCATAGTGCCAAGTGAATTTAAG
Seq C2 exon
CCAACAAGCCCAAACCGTGGCTGGTTTGTGCCACCGTTTGGTGGAAACCCCTGGTGGGTGTACCTGGGAGCGTCTGTGCCGGCCCTGCTGGTCACCATCCTGCTCTTCATGGATCAGCAGATCACCGCTGTCATTGTCAATCGCAAGGAGCACAAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.7=100)
A:
PF0095516=HCO3_cotransp=FE(11.6=100)
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGAGCTGGTGGGTAAA
R:
TGAAGAGCAGGATGGTGACCA
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]