RnoEX6041895 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20512545-20531635:-
Coord C1 exon
chr14:20531444-20531635
Coord A exon
chr14:20514807-20514920
Coord C2 exon
chr14:20512545-20512706
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTATTTTTTCAGGCA
3' ss Score
11.31
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TACCACAATGCTACCTTTGACTGGGCCTACTTGTCAAAGAAAGAGTGTGTGAAATTTGGAGGAAAGCTCGTGGGAAACAACTGTGACTTCGTGCCTGACATCACACTCATGTCCTTCATCCTCTTCCTGGGCACTTACACCTCTTCTATGGCCATGAAGAAATTCAAAACCAGCCGCTATTTTCCAACCACA
Seq A exon
GCAAGAAAACTGATCAGCGATTTTGCCATCATCCTGTCCATTCTCATATTCTGTGTAATAGACGCCCTCGTCGGTGTGGATACTCCGAAGCTAATTGTGCCAAGTGAGTTCAAG
Seq C2 exon
CCAACAAGCCCTCACCGGGGTTGGTTTGTCCCACCCTTTGGAGGAAACCCCTGGTGGGTGTGCCTTGCTGCTGCTATCCCGGCTTTGCTAGTCACCATCCTGATTTTCATGGACCAGCAAATCACGGCCGTGATTGTGAACAGGAAAGAACATAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'39-35,'39-33,43-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.1=100)
A:
PF0095516=HCO3_cotransp=FE(7.1=100)
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGTGACTTCGTGCCTG
R:
CCGTGATTTGCTGGTCCATGA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]