DreEX0073090 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:45032054-45039030:+
Coord C1 exon
chr10:45032054-45032245
Coord A exon
chr10:45038580-45038693
Coord C2 exon
chr10:45038869-45039030
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTATACTCGTGCAGCTT
3' ss Score
6.98
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTCAACTTCTCTGCTCTGGACTGGACTCAGATCAGTAAGAAGGAGTGTCTGAGGCTCGGCGGCTCGCTGGTGGGCAAATCCTGCAAATATGTGCCGGATCTGGCCATGCTGTCCTTCATCCTGTTCTTCGGCACTTACTCCATGACCATCTCGCTCAAGAAGTTCAAGTCTAGCAGATATTTCCCTACGAAG
Seq A exon
CTTCGGAAACTCATCAGTGATTTTGCAATCTTCACATCAATCATGACTTTTGTTGGTCTCGATATGTTTATGGGACTTAAAACACCCAAACTGATTGTGCCGACTGAGTTTAAG
Seq C2 exon
CCGACGCGTCCTGACCGTGGCTGGATCGTGATGCCGATGGGCAGGAACCCGTGGTGGATGTGTTTGGCCAGTTTTGTTCCTGCTCTGCTGGTCACCATTCTCATCTTCATGGATCAGCAGATCACCGCCGTCATCGTCAACCGCAAAGAAAACAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.4=100)
A:
PF0095516=HCO3_cotransp=FE(7.3=100)
C2:
PF0095516=HCO3_cotransp=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGGACTGGACTCAGA
R:
AAACACATCCACCACGGGTTC
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]