DreEX0073448 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23104218-23158714:+
Coord C1 exon
chr1:23104218-23104289
Coord A exon
chr1:23158115-23158186
Coord C2 exon
chr1:23158643-23158714
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTTTATTTGCCAGGGA
3' ss Score
8.81
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCGTCTCAACAGGAATAATCTTCAGGTTCTTCCGGAGTTGCTGTTTCTGGGCACGACCAAACTCTTCAGACT
Seq A exon
GGACCTGAGTGAAAATCAAATCCAGGGGATTCCCAGAAAAGCCTTCAGAGGATCTACAGAGATCAAAAACCT
Seq C2 exon
GCAGCTGGACTATAATCAGATTTCCTGCATTGAAGATGGAGCGTTCAGAGCTCTGCGGGACTTAGAAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'4-6,'4-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(5.3=12.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTCAACAGGAATAATCTTCA
R:
GTACTTCTAAGTCCCGCAGAGC
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]