RnoEX0083448 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260899527-260968294:-
Coord C1 exon
chr1:260968223-260968294
Coord A exon
chr1:260900482-260900553
Coord C2 exon
chr1:260899527-260899598
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTTGTCCCCCAGGGA
3' ss Score
12.12
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ACGACTGAACCGCAACCAGCTGCAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTGTCCAGACT
Seq A exon
GGACCTGAGTGAGAATTCTCTCCAGGCTGTGCCCAGAAAGGCTTTCCGAGGAGCCACAGACCTCAAAAATCT
Seq C2 exon
ACAGCTGGACAAGAACCAGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'5-4,'5-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(5.3=12.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTGAACCGCAACCAG
R:
AGAACCTCCAGTCCCCGTAG
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]