DreEX6059537 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:465270-484982:-
Coord C1 exon
chr13:484911-484982
Coord A exon
chr13:465431-465502
Coord C2 exon
chr13:465270-465341
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTCTTCTGAACAGGGA
3' ss Score
9.62
5' ss Seq
CCTGTGAGA
5' ss Score
2.4
Exon sequences
Seq C1 exon
ACGTCTGAACAGAAATCAGCTTCACCAGCTTCCAGAGCTCCTGTTCCAGAAGAACGCCGCGCTGTCCAGACT
Seq A exon
GGACCTGAGTGAGAACTTCATCCAGGCGATTCCTCGAAAGGCCTTCAGAGGAGCGACGGACATCAAAAACCT
Seq C2 exon
GCAGCTGGACAAGAACCACATCAGCTGCATCGAGGATGGAGCGTTCAGAGCCATGCGCGGGCTAGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTGAACAGAAATCAGCTTCA
R:
AGCACTTCTAGCCCGCGC
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]