DreEX0074858 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13085107-13087120:+
Coord C1 exon
chr21:13085107-13085211
Coord A exon
chr21:13086922-13086954
Coord C2 exon
chr21:13087085-13087120
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCATCCCACCATCAGCAA
3' ss Score
5.5
5' ss Seq
AAGGTCACT
5' ss Score
3.39
Exon sequences
Seq C1 exon
GATCTGAAAGCAAATGAGTCTCGGCTGAGGGACATAAACAAGGTGGCGTCTGAGCTGGAGTCTGAAGGTCTGATGGCAGAAGAGGCTCCTGTGGTTCAGGCCCAG
Seq A exon
CAAGTAGAGGTGCTGGGCTCAGCTCCTGGCAAG
Seq C2 exon
GATGAAGCAGACTCCAAAGGTGCATCTCCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.2=100)
A:
PF0043516=Spectrin=PD(6.7=54.5)
C2:
PF0039314=6PGD=FE(9.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGTCTCGGCTGAGGGA
R:
GCACCTTTGGAGTCTGCTTCA
Band lengths:
117-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]