DreEX0078858 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49034249-49044098:+
Coord C1 exon
chr17:49034249-49034395
Coord A exon
chr17:49038310-49038354
Coord C2 exon
chr17:49044042-49044098
Length
45 bp
Sequences
Splice sites
3' ss Seq
CATTTTGGCTTTGTGAAAAGGAC
3' ss Score
4.43
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCTGTTCCAGAGATGAGGCCACGATGCGAAAGCGCTCTCTGTCTCTCTCCCACAGAGGCCGCAGCAAGAAAGGGGTCTTTTCATCCCTTAAGGGCCTGGATACTCTTACCAAGCGAGGCCATGAAAAAAAGCATTCTCTCTCACAG
Seq A exon
GACCTCAGTGAATTGAGCTGCTGTTCTTACAGTGGTCTTCCGCAG
Seq C2 exon
GTCTTTGACAGTGATGGCGGAGCGCAGCTAAATTCCGTTACACATTGTAGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000156492fB6608
Main Skipping Isoform:
ENSDART00000156492fB6609
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGCGCTCTCTGTCTCTC
R:
TCCGCCATCACTGTCAAAGAC
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]