DreEX0078859 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49034249-49047721:+
Coord C1 exon
chr17:49034249-49034395
Coord A exon
chr17:49044042-49044098
Coord C2 exon
chr17:49047554-49047721
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCTTCCTCTTTCAGGTC
3' ss Score
14.58
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATCTGTTCCAGAGATGAGGCCACGATGCGAAAGCGCTCTCTGTCTCTCTCCCACAGAGGCCGCAGCAAGAAAGGGGTCTTTTCATCCCTTAAGGGCCTGGATACTCTTACCAAGCGAGGCCATGAAAAAAAGCATTCTCTCTCACAG
Seq A exon
GTCTTTGACAGTGATGGCGGAGCGCAGCTAAATTCCGTTACACATTGTAGTTTTAAG
Seq C2 exon
CGGTTAGGCAGTTTGACGAATGTTTACTCAATTGTGCCACCTGAAGGCAGCCAGTGGGATTGCAGTCGAGAAAGCACAACATGCATCTACATGCCAAACTGCCAGACTGTTACTGTTCTCCTGAAAAGTCATCACACTGTCATGGATGTGTTGGCTGAGACCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(54.4=55.4)
Main Inclusion Isoform:
ENSDART00000156492fB6609
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCCTGGATACTCTTACCA
R:
TGCTTTCTCGACTGCAATCCC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]