RnoEX6000757 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44357733-44367106:+
Coord C1 exon
chr1:44357733-44357879
Coord A exon
chr1:44358857-44358928
Coord C2 exon
chr1:44366948-44367106
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCCTTTCTGTCAGATG
3' ss Score
9.46
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTATGTTCCAGAGACGATTCTGCTCTCAGGAAAAGAACACTTTCCTTTACCCAGAGAGCAAAAAGCAAGAAAGGCCTATTTTCTTCATTGAAAGGTCTGGACACTCTAGCAAGAAAAGGGAGGGAGAAGAGAGCTTCTATAACTCAG
Seq A exon
ATGTTTGATTCGAGCCACAGCCATGGATATCTTGGAACTCAACTACCTCAAAACTCCACTAACTCCAGTGAG
Seq C2 exon
GTCCATGACCTGCATCTGTATGGCTCCTCAGCAGACAGCACTCTCCGAGACAGCACGTGGGAAGTACAGACTTATGTCCACTTCCAGGATAACGAAGGAGTCACTGTGATCATCAAGCCAGAGCACAGGGTGGAAGATGTTCTGGCTTTGGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'13-12,'13-11,14-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.292 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(53.7=54.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAGGGAGAAGAGAGCTT
R:
GCCAGAACATCTTCCACCCTG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]