GgaEX0020305 @ galGal3
Exon Skipping
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52433200-52441225:+
Coord C1 exon
chr3:52433200-52433346
Coord A exon
chr3:52436401-52436463
Coord C2 exon
chr3:52441061-52441225
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTATCTGTATTATTAATAGATT
3' ss Score
7.06
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCTGCTCCAGGGATGAAGCTGCTCTCAGGAAGCGTACCCTGTCTCTGTCTCAAAGAGTCCGAAATAAGAAGGGTTTGTTTTCTTCACTAAAAGGACTGGACACACTGGCAAGAAAAGGAAAAGAGAAGCGACCTTCCATAACGCAG
Seq A exon
ATTTTTGACTCCACTGGAGGACATGGATTTGCCGGTGTCCAGAATTCAGCCAACTCTGCTGAG
Seq C2 exon
CAAGTTGATGAATTTTTGAATGTCTACTGCTCAGTACCGGACAGCATCCAGAAGGAGAATGCTTGGGAAACACAAACGTATGTTCACTTCTGTGACGGTCAAGGAGTAGCTTTAACTCTGAAACCAGACCACAGGGTGGAAGATGTTCTGTCTCTGGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(56.6=54.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGACCTTCCATAACGCA
R:
AGCTACTCCTTGACCGTCACA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]