HsaEX0064964 @ hg38
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:155165263-155176977:+
Coord C1 exon
chr6:155165263-155165409
Coord A exon
chr6:155168845-155168916
Coord C2 exon
chr6:155176816-155176977
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCCCCATCTGTCAGATA
3' ss Score
9.63
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTATGTTCTAGAGATGACTCTGCTCTCCGGAAAAGGACACTGTCACTGACCCAGCGAGGGAGAAACAAGAAGGGAATATTTTCTTCGTTAAAAGGGCTGGACACACTGGCCAGAAAAGGCAAGGAGAAGAGACCTTCTATAACTCAG
Seq A exon
ATATTTGATTCAAGTGGCAGCCATGGATTTTCTGGAACTCAGCTACCTCAAAACTCCAGTAACTCCAGTGAG
Seq C2 exon
GTCGATGAACTTCTGCATATATATGGTTCAACAGTAGACGGTGTTCCCCGAGACAATGCATGGGAAATCCAGACTTATGTCCACTTTCAGGACAATCACGGAGTTACTGTAGGGATCAAGCCAGAGCACAGAGTAGAAGATATTTTGACTTTGGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(56.9=53.7)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACACTGTCACTGACCCA
R:
TTTCCCATGCATTGTCTCGGG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development